For the cluster I manage, a user needed exabayes(there will be another post on building that later) but their prebuild binaries didn’t work on Rocks 6.1, which is based on CentOS 6.3. GCC is too old to build it as they use C++11, but luckily clang 3.4 is available from EPEL. Only thing, it still wouldn’t compile. I got the following two errors:
unknown type name ‘type_info’
./src/Density.cpp:79:34: error: use of undeclared identifier ‘begin’
double sum = std::accumulate(begin(values), end(values), 0. );
While there was a potential workaround for the first error, nothing viable was to be found for dealing with the second error. But this research pointed in the next direction, building LLVM’s libc++ as these errors have to do with GCC’s old version of the standard c++ library. Its a bit complicated and rather hackish but looks like it works, so here we go.
Download libc++ via svn, but instead of following their directions for building, do this:
Thanks to this blog post, which is in Chinese, but the commands are easy to understand. After building the library, copy it to /usr/lib(or because this is 64bit, I put it in /usr/lib64) and create the needed symlinks. Then copy libcxx/include to /usr/include/c++/v1. Remember this as we’ll be replacing libc++ later with a rebuild version.
Next is building libc++abi. Again download from svn and build it like above and copy the library to /usr/lib64 and make the symlinks. The include directory doesn’t need to be copied. Now time to rebuild libc++ with libc++abi. This requires CMake, and I opted for the newer version available from EPEL. The command is then cmake28. I also started with a fresh download of libc++
CC=clang CXX=clang++ cmake28 -G “Unix Makefiles” -DLIBCXX_CXX_ABI=libcxxabi -DLIBCXX_LIBCXXABI_INCLUDE_PATHS=”<libc++abi-source-dir>/include” -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr ../
Since I don’t like to mess with the system install, I used DESTDIR during the make install step. This then allows me to build an rpm package using rocks create package. I also create a package for libc++abi.
With this now its possible to compile with clang and c++11. Test it out like so: clang++ -stdlib=libc++ -std=c++11 input.cpp